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Upload genotypes
New project name
Must
not
contain any characters except letters, digits, underscores - spaces are
not
allowed
You must not use patient names or initials.
Access restriction
Yes
With access restriction active, a secret key for data access will be issued during the upload process. There is
absolutely no way
for you to retrieve your data without this key.
Without access restriction, anyone will be able to view and delete your data.
Genotypes from
VCF file
SNP chip
Choose SNP chip
Affy: Axiom_Exome_1A
Affy: Axiom_Exome319
Affy: Axiom_GW_ASI
Affy: Axiom_GW_EAS
Affy: Axiom_GW_EUR
Affy: Axiom_GW_Hu
Affy: Axiom_GW_HuOrigin
Affy: Axiom_GW_LAT
Affy: Axiom_GW_PanAFR
Affy: Axiom_PMRA
Affy: CytoScanHD
Affy: GenomeWideSNP_5
Affy: GenomeWideSNP_6
Affy: Mapping10K_Xba142
Affy: Mapping250K_Nsp
Affy: Mapping250K_Sty
Affy: Mapping50K_Hind240
Affy: Mapping50K_Xba240
Genotype file
Choose SNP chip
Sample file (Affy Mapping50K_Hind240)
Sample VCF file (genome version 37)
AutozygosityMapper is primarily aimed at VCF files, we recommend using
HomozygosityMapper
instead.
The filename must
not
contain any characters except letters, digits, & underscores - spaces are
not
allowed. This file must be plain text and can be zipped or gzipped -
formats & sample files
.
There is no standard format for SNP array genotypes - should you experience problems with your file or miss the array in the drop-down menu, please send an email.
Minimum coverage
Genotypes with a coverage below this value are neglected.
You
must
set this value to 0 unless your VCF file has the
DP flag in the FORMAT(!) column.
Genome version
Enter the genome version you are using as integer (e.g. 37 or 38).
Submit
Due to storage limitations, data created as guest will be deleted from time to time (we keep the data at least for three weeks).
You cannot use the homozygosity around a gene in GeneDistiller if your genotypes are private and you are not logged in.
Project and file names
must not
contain any other characters than letters, digits and _.
There is no size limit for uploads but very large files (> 100 MB) are likely to cause server time-outs unless the connection is very fast. Please zip or gzip your files to accelerate data upload - especially files larger than 10 MB.
If you experience network time-outs anyway, either split your file into smaller parts or write us an e-mail - we will certainly find a solution to upload your data.
Never
press reload after submitting (unless another page is displayed).
