HomozgosityMapper pedigree Login

Upload genotypes

New project name
Must not contain any characters except letters, digits, underscores - spaces are not allowed
You must not use patient names or initials.
Access restriction
  • With access restriction active, a secret key for data access will be issued during the upload process. There is absolutely no way for you to retrieve your data without this key.
  • Without access restriction, anyone will be able to view and delete your data.
Genotypes from
Choose SNP chip
Genotype file
Sample file (Affy Mapping50K_Hind240) Sample VCF file (genome version 37) AutozygosityMapper is primarily aimed at VCF files, we recommend using HomozygosityMapper instead. The filename must not contain any characters except letters, digits, & underscores - spaces are not allowed. This file must be plain text and can be zipped or gzipped - formats & sample files. There is no standard format for SNP array genotypes - should you experience problems with your file or miss the array in the drop-down menu, please send an email.
Minimum coverage
Genotypes with a coverage below this value are neglected. You must set this value to 0 unless your VCF file has the DP flag in the FORMAT(!) column.
Genome version
Enter the genome version you are using as integer (e.g. 37 or 38).
  • Due to storage limitations, data created as guest will be deleted from time to time (we keep the data at least for three weeks).
  • You cannot use the homozygosity around a gene in GeneDistiller if your genotypes are private and you are not logged in.
  • Project and file names must not contain any other characters than letters, digits and _.
  • There is no size limit for uploads but very large files (> 100 MB) are likely to cause server time-outs unless the connection is very fast. Please zip or gzip your files to accelerate data upload - especially files larger than 10 MB.
  • If you experience network time-outs anyway, either split your file into smaller parts or write us an e-mail - we will certainly find a solution to upload your data.
  • Never press reload after submitting (unless another page is displayed).